Editors: Ruchi Yadav, Deepti Nigam

Integrative Metagenomics: Techniques, Analysis, and Applications

eBook: US $89 Special Offer (PDF + Printed Copy): US $143
Printed Copy: US $98
Library License: US $356
ISBN: 979-8-89881-451-9 (Print)
ISBN: 979-8-89881-450-2 (Online)
Year of Publication: 2026
DOI: 10.2174/97988988145021260101

Introduction

Integrative Metagenomics: Techniques, Analysis, and Applications presents a comprehensive and structured exploration of modern metagenomics, bridging foundational principles with advanced analytical methodologies and real-world applications. The book begins with core concepts, the evolution of metagenomic studies, and the growing role of bioinformatics platforms in microbial research.

It systematically guides readers through metagenomic sequencing techniques, including shotgun and 16S rRNA approaches, followed by detailed workflows for data acquisition, preprocessing, quality control, and assembly. Extensive coverage of bioinformatics tools and pipelines equips readers with practical knowledge for sequence alignment, taxonomic and phylogenetic classification, and functional annotation.

The book further explores advanced domains such as metatranscriptomics, multi-omics integration, and metagenome-wide association studies (MWAS), supported by case studies in human microbiome research and environmental systems. Dedicated chapters on wet-lab validation, experimental methodologies, and translational applications in human disease and drug discovery provide a strong link between computational analysis and laboratory science.

Concluding with current research trends and future directions, the book highlights emerging technologies such as AI-driven analytics, long-read sequencing, and personalised medicine, offering a forward-looking perspective on the role of metagenomics in healthcare, agriculture, environmental sustainability, and industrial biotechnology.


Key Features

  • - Detailed overview of metagenomic workflows and genome sequencing techniques.
  • - Comprehensive guide to bioinformatics tools, pipelines, and platforms for metagenomic analysis.
  • - In-depth discussion on taxonomic classification, phylogenetics, and functional annotation.
  • - Integration of advanced topics such as metatranscriptomics, multi-omics, and MWAS.
  • - Case studies and practical insights on the human microbiome, soil ecosystems, and environmental applications, integrated with wet-lab validation and computational workflows.
  • - Exploration of AI, machine learning, and emerging technologies in metagenomics.

Target Readership:

Researchers, academics, postgraduate students and professionals in bioinformatics, microbiology, genomics, biotechnology, and computational biology.

Foreword

- Pp. i-ii (2)
Lam-Son Phan Tran
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Preface

- Pp. iii-v (3)
Ruchi Yadav, Deepti Nigam
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List of Contributors

- Pp. vi

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Introduction to Integrative Metagenomics

- Pp. 1-11 (11)
Arpita Singh, Deepti Nigam*

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Metagenomic Sequencing Techniques

- Pp. 12-19 (8)
Sweksha Ranjan, Ruchi Yadav*

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Metagenomics Data Acquisition and preprocessing

- Pp. 20-30 (11)
Roshini Singh*

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Basic Assembly Methods for Metagenomic Data

- Pp. 31-40 (10)
Sweksha Ranjan, Ruchi Yadav*

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Bioinformatics Tools for Metagenomic Analysis

- Pp. 41-62 (22)
Ankit Singh Negi, Ruchi Yadav*

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Metagenomic Taxonomic and Phylogenetic Classification

- Pp. 63-72 (10)
Ankit Singh Negi*, Ruchi Yadav

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Functional Annotation in Metagenomics

- Pp. 73-81 (9)
Ankit Singh Negi*

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Metatranscriptomics Analysis

- Pp. 82-91 (10)
Sweksha Ranjan*, Ruchi Yadav

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Multi-Omics Integration in Metagenomics

- Pp. 92-103 (12)
Arpita Singh, Ruchi Yadav*

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Metagenome-Wide Association Studies (MWAS)

- Pp. 104-119 (16)
Roshini Singh*, Harshit Chaturvedi

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Experimental Validation Technique in Wet-Lab Metagenomics

- Pp. 120-130 (11)
Ankit Singh Negi, Harshit Chaturvedi*

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Metagenomics in Human Disease and Drug Discovery

- Pp. 131-142 (12)
Ankit Singh Negi, Harshit Chaturvedi*

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Current Research in Metagenomics

- Pp. 143-156 (14)
Roshini Singh, Ruchi Yadav*

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Future Directions in Computational Metagenomics

- Pp. 157-169 (13)
Roshini Singh, Deepti Nigam*

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Appendix A

- Pp. 170-172 (3)
Ankit Singh Yadav*, Ruchi Singh
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Subject Index

- Pp. 173-175 (3)
Ruchi Yadav, Deepti Nigam
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